MUMmer is a system for rapidly aligning entire genomes. The current version (release 4.x) can find all 20 base pair maximal exact matches between two bacterial genomes of ~5 million base pairs each in 20 seconds, using 90 MB of memory, on a typical 1.8 GHz Linux desktop computer.

2017年12月27日 · What is a Mummer? "It's any man, woman or child involved in the fantasy of song, dance and costume splendor on each January 1st in the annual Philadelphia New Year's Day parade,"...

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on …

2018年1月22日 · mummer: 基于后缀树(suffix tree)数据结构，能够在两条序列中有效定位极大唯一匹配(maximal unique matches)，因此它比较适用于产生一组准确匹配(exact matches)以点图形式展示，或者用来锚定从而产生逐对联配(pair-wise alignments)

2018年1月26日 · In this paper we describe MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing of input query sequences.

MUMmer is a system for rapidly aligning large DNA sequences to one another. It can align: whole genomes to other genomes; large genome assemblies to one another; partial (draft) genomes sequences to one another; or (with release 4) a set of reads to a genome. MUMmer is very fast and easy to run.

2020年7月25日 · mummer这个程序主要是找到参考序列和query序列之间准确匹配的区域。query最大可以有32个。mummer是不容错配的，适合用来画共线性图，但是我们通常的比对都是必须容许一定的错配和gap的，mummer比对完了之后可以使用mummerplot这个程序绘制出共线性 …

The meaning of MUMMER is a performer in a pantomime; broadly : actor.

MUMMER definition: 1. (especially in the past) a person who is not a trained actor who performs in traditional…. Learn more.

MUMmer is a modular and versatile package that relies on a suffix tree data structure for efficient pattern matching. Suffix trees are suited for large data sets because they can be constructed and searched in linear time and space.