2025年3月6日 · Even so, researchers still lack a flexible, comprehensive and modularized R package to analyze and manage the data fast and easily. Based on this background, we …

Though there has been a lot of R packages in this filed, it is still difficult to perform data mining fast, efficiently and comprehensively. Therefore, we created R microeco package (abbreviated …

R package file2meco (https://chiliubio.github.io/microeco_tutorial/file2meco-package.html) is designed to directly read the output files of some famous tools into microtable object. …

The microeco package has several advantages compared to other packages in R. The primary objective behind the development of this package is to assist users in rapidly analyzing …

In this section, we use the example data in file2meco package (https://chiliubio.github.io/microeco_tutorial/file2meco-package.html) to demonstrate the …

Please also see https://chiliubio.github.io/microeco_tutorial/intro.html#tax4fun2 for downloading ncbi-blast and Ref99NR/Ref100NR. For windows system, ncbi-blast-2.5.0+ is recommended …

Here, we continue to use the aplot and microeco packages to demonstrate how to add boxplots of coordinate scores to PCoA graphs. Similar combination graphs can be easily manipulated, so …

Tutorial for R microeco package (v1.13.0) Chapter 11 meconetcomp package To facilitate microbial co-occurrence network comparison, R package meconetcomp ( …

Many methods in microeco package can be used not only for the traditional species abundance data, i.e. species-sample table, but also for other data, such as metagenomic data. HUMAnN ( …

The microeco package has fully supported pipelining operations since version 1.12.0. Based on the characteristics of R6 class objects, pipelining operations can be performed using the $ …