This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, ...

Evolutionary relationships, or phylogeny, involves studying evolutionary paths or lineages of organisms and is often represented by a phylogenetic tree. A phylogenetic tree shows the points at which ...

Abstract: Much evidence from biological theory and empirical data indicates that, gene trees, phylogenetic trees reconstructed from different genes (loci), do not have to have exactly the same tree ...

Novel orthornaviral viral sequences are constantly being discovered from environmental datasets, but generating high-quality and comprehensive phylogenetic trees of Orthornavirae to resolve their ...

As of June 16, 2022, there were 10,594,265 sequences displayed in the UShER COVID-19 phylogenetic tree. 10 million sequences of COVID-19’s genomic code have now been organized into a phylogenetic tree ...

Angiosperms are the most diverse group of land plants but, of course, completing the whole of the Plant and Fungal Trees of Life means scientists also need to sequence the non-flowering plants such as ...

that are developed from a common ancestor. The diagram is known as a phylogenetic tree. Phylogenetic analysis is important for gathering information on biological diversity, genetic ...