One is a protein cutout model, whereby a set of protein atoms in and around the binding site are carved out, dangling bonds are capped with hydrogens, and only atoms directly in the protein binding ...

“One often overlooked parameter is the exact binding site of your antibody on the protein of interest, also known as the epitope,” says Danielle Callahan, director of global product management ...

Based on these results combined with previous research, the authors suggest that MDGA2 and BDNF maintain a natural balance by competing with each other for TrkB protein binding sites, and disruption ...

These calculations are force-field-based and sample the whole complex (protein and ligand) in solvent. As an alternative, we used a DFT-based approach in which only a minimal model was considered for ...

Meat sales hit record $104.6 billion as Americans embrace protein-packed diets US meat sales reached an all-time high of $104.6 billion in 2024, with volume up 2.3% from 2023, according to the 20th ...

Most of these antibiotics are produced outside the ribosome, the cellular structure responsible for protein synthesis ... a novel structure, a new binding site, and a distinct mechanism of ...

revealing that overlapping lipid contacts can partially compensate for the effects of binding site mutations. Extending our insights to naturally occurring proteins, we identify a stabilizing CDL site ...

Proteins change their conformations as part of their biological functions, for example, when binding another molecule (ligand). Two pathways are conceivable: Either the ligand binds preferentially to ...

Various deep learning-based algorithms have been proposed to identify CircRNA-protein binding sites. These methods predict whether the CircRNA sequence includes protein binding sites from the sequence ...

The virtual screening of large numbers of compounds against target protein binding sites has become an integral component of drug discovery workflows. This screening is often done by computationally ...