This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, ...

Evolutionary relationships, or phylogeny, involves studying evolutionary paths or lineages of organisms and is often represented by a phylogenetic tree. A phylogenetic tree shows the points at which ...

Abstract: Much evidence from biological theory and empirical data indicates that, gene trees, phylogenetic trees reconstructed from different genes (loci), do not have to have exactly the same tree ...

Germany Phylogenetic analysis frequently leads to the creation of many phylogenetic trees, either from using multiple genes or methods, or through bootstrapping or Bayesian analysis. A consensus tree ...

Abstract: Phylogenetic placement, the problem of placing a “query” sequence into a precomputed phylogenetic “backbone” tree, is useful for constructing large trees, performing taxon identification of ...

Angiosperms are the most diverse group of land plants but, of course, completing the whole of the Plant and Fungal Trees of Life means scientists also need to sequence the non-flowering plants such as ...

that are developed from a common ancestor. The diagram is known as a phylogenetic tree. Phylogenetic analysis is important for gathering information on biological diversity, genetic ...